It would be helpful if you would upload screenshots to help explain cause I can't quite figure out what you're saying, or at least, I'm not sure.
Are you saying that if you have say, 40 items in your inventory then make make 1 craft of that same item when it comes up with the adding it to your inventory where mine then says 3 XXXX (43) to show that I just made 3 and my new total of that item is 43 that yours it saying 3 XXXX (40) ?